Index

A

add_contact_predictions() (pycom.analysis.CoMAnalysis method)

C

calculate_scaled_coevolution_matrix() (pycom.analysis.CoMAnalysis static method)

CoMAnalysis (class in pycom.analysis)

F

find() (pycom.interface.PyCom method)

G

get_biological_process_list() (pycom.interface.PyCom method) get_cellular_component_list() (pycom.interface.PyCom method) get_cofactor_list() (pycom.interface.PyCom method) get_data_loader() (pycom.interface.PyCom method) get_developmental_stage_list() (pycom.interface.PyCom method) get_disease_list() (pycom.interface.PyCom method) get_domain_list() (pycom.interface.PyCom method)

get_ligand_list() (pycom.interface.PyCom method) get_molecular_function_list() (pycom.interface.PyCom method) get_organism_list() (pycom.interface.PyCom method) get_ptm_list() (pycom.interface.PyCom method) get_residue_frequencies() (pycom.analysis.CoMAnalysis method) get_top_contacts_from_coevolution() (pycom.analysis.CoMAnalysis method) get_top_scoring_residues() (pycom.analysis.CoMAnalysis method)

L

load_matrices() (pycom.interface.PyCom method)

P

paginate() (pycom.interface.PyCom static method)

PyCom (class in pycom.interface)

S

save_top_scoring_residue_pairs() (pycom.analysis.CoMAnalysis method)

scale_and_normalise_coevolution_matrices() (pycom.analysis.CoMAnalysis static method) scaled_matrix_to_contact_predictions() (pycom.analysis.CoMAnalysis method)